Bioperl: Genbank location qualifiers.

[Ian Davies]

Hi there,
I have been playing around  with Bioperl,
and have read a Genbank annotated sequence record,
and written it out again as follows:

$in  = Bio::AnnSeqIO->new(-file => "$home/data/chopped_gb_file" , -format => 
'GenBank');
$out = Bio::AnnSeqIO->new(-fh=>*STDOUT,-format => 'GenBank');

while ($seq = $in->next_annseq() ) {
        $out->write_annseq($seq);
}

I then diffed the input and output, and noticed
that the location qualifiers < . >
for fuzzy locations had been lost.

Are these not handled?

regards,
Carl Dobson.
________________________________________________________________________
Get Your Private, Free E-mail from MSN Hotmail at http://www.hotmail.com

=========== Bioperl Project Mailing List Message Footer =======
Project URL: http://bio.perl.org/
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
====================================================================