Bioperl: Re: FTHelper changes

[James Gilbert]

Hilmar,

On Thu, 11 May 2000, Hilmar Lapp wrote:

> > Finally, we don't (as far as I can see) explicitly
> > trap locations which we can't yet model such as:
> > 
> > 23.45   Fuzzy location (a single base somewhere
> >         between 23 and 45 inclusive)

"(23.45)..102" is spat out, but "23.45" is eaten
and becomes "23..45" in the output file.

> > J00194:(100..202),1..245,300..422
> >         Part of this feature is bases 100..202 of
> >         entry with accession number J00194.

This is trapped as advertised.

> We do trap these, which you would realize if you run GenBank through the
> parser. What happens is that warnings are issued.

	James

James G.R. Gilbert
The Sanger Centre
Wellcome Trust Genome Campus
Hinxton
Cambridge                        Tel: 01223 494906
CB10 1SA                         Fax: 01223 494919

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