Bioperl: running local blasts

[Alan Williams]

I am. However it required:
  1) implementing the appropriate stub in the LocalBlast.pm module
  2) fixing Blast.pm to call LocalBlast.pm
This was with 0.5 and 0.6 (not sure about 0.6.1). You may also want to
change the MIN/MAX sequence size constraints set in the LocalBlast.pm as
well. 

If you need more detailed pointers let me know.

-Alan

---------------------------------
Alan Williams
Neomorphic, Inc.
Alan@Neomorphic.com
510-981-8513
---------------------------------

On Wed, 21 Jun 2000, Joey Morris wrote:

> Date: Wed, 21 Jun 2000 15:58:13 -0400
> From: Joey Morris <rjmorris@unity.ncsu.edu>
> To: vsns-bcd-perl@lists.uni-bielefeld.de
> Subject: Bioperl: running local blasts
> 
> Can anyone tell me if they are successfully running local blast searches
> using the LocalBlast.pm module? I just downloaded 0.6.1 and I get this error
> when running a local blast:
> 
> *** 1 Blast reports produced fatal errors:
> Undefined subroutine &Bio::Root::Object::_rearrange called at
> /local/lib/perl/lib/Bio/Tools/Blast/Run/LocalBlast.pm line 309.
> 
> I experienced the same issue with 0.6.0 but not with the 0.05.1 release.
> I've reported it as a bug but there's been no progess on it apparently.
> 
> Thanks,
> Joey
> 
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