FW: [Bioperl-l] Fwd: [Biojava-l] new NCBI blast outputs XML

[Sergei Shavirin]

Jeffrey,

OK. I will change this. Just a typo..

Sergei

On Fri, 11 Aug 2000, Jeffrey Chang wrote:

> Hi Sergie,
> 
> I'm really excited to have XML output for Blast.  It should make things a
> lot easier to parse!
> 
> From your blstxml.dtd,
> 
> <!-- 
>  Karlin-Altschul parameter H
>  -->
> <!ELEMENT Statistics_enthropy ( %REAL; )>
> 
> Should this be Statistics_entropy?
> 
> Jeff
> 
> 
> 
> 
> On Fri, 11 Aug 2000, Sergei Shavirin wrote:
> 
> > 
> > Andrew,
> > 
> > Here are ASN.1 and DTD specs and example of simple XML output.
> > Please let me know if you need more information.
> > 
> > Sergei 
> > 
> > >From: Andrew Dalke [mailto:dalke@acm.org]
> > >Sent: Friday, August 11, 2000 3:57 PM
> > >To: bioperl-l@bioperl.org
> > >Cc: Geer, Lewis (NLM)
> > >Subject: Re: [Bioperl-l] Fwd: [Biojava-l] new NCBI blast outputs XML
> > >
> > >
> > >Lewis Geer said:
> > >>The standalone blast server (available on the our ftp site) now has XML
> > >>output, thanks to Sergei Shavirin.  He said he'll try to add it to blastall
> > >>before he leaves for vacation today.  Eventually, XML should be available
> > >>from our public BLAST web pages, too.
> > >
> > >Any chance an example output file can be put somewhere?  I would like to
> > >see what it looks like.  I'm working on a parser project for biopython
> > >and want to make sure I'm using consistent names for the same data items.
> > >
> > >                    Andrew
> > >                    dalke@acm.org
> > >
> > >
> > >_______________________________________________
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> > 
> > ------------- End Forwarded Message -------------
> > 
> > 
>