Bioperl: repetitive DNA

[Lincoln Stein]

Thanks for the improvement.

Lincoln

Gustavo Glusman writes:
 > >I wonder if this RE is really ok, especially when I see the side effect of
 > >"matching the longest pattern" of regular expression matching
 > >between repeat numbers 2 and 3.
 > 
 > Correct. Simple modification:
 > 
 > >	$seq =~ s/((.+?)\2{$NREPEAT,})/'N' x length $1/eg;
 >                       ^-- minimal matching
 > 
 > Works quite nicely this way.
 > 
 > 
 >      ____________________________________________________________
 >      Gustavo Glusman              Founder/administrator of BioMOO
 >      Gustavo@bioinfo.weizmann.ac.il    (public PGP key available)
 >      http://bioinfo.weizmann.ac.il/Gustavo
 >         Visit BioMOO, the biologists' virtual meeting place, at
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 > 
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-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
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