Bioperl: microsatellites

[Joe Ryan]

Sputnik 
A program optimized to quickly find all dimeric to pentameric repeats 
is sputnik, by Chris Abajian available at 
ftp://ftp.nhgri.nih.gov/pub/software/sputnik/

RepeatMasker
http://repeatmasker.genome.washington.edu/
"You can get a list of potentially polymorphic microsatellites with the
option -poly."


On Wed, Apr 21, 1999 at 11:38:30PM -0500, Joshua wrote:
> I'm writing to see if anyone has written anything to search for 
> microsatellies within a given piece of DNA(s).  I think with all the 
> utility and effort that goes into these Short Seqence Repeats, 
> someone on the list may have already written what I'd like to do.
> 
> Josh
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