Bioperl: Reading from a stream into Bio::Seq

[Lincoln Stein]

If this is a general problem, I'd recommend that we work on an XML or
Boulder-like syntax for serializing Bio::* objects.  An easy, but
Perl-specific, alternative is simply to use the Perl Data::Dumper
serialization class.

Lincoln

James Gilbert writes:
 > 
 > I'd like to be able to make a new Seq object from
 > a fromatted string (or array) as well as from a
 > stream.
 > 
 > On Thu, 22 Oct 1998, Ewan Birney wrote:
 > 
 > > 
 > > I should really know this, but does anyone know whether you can
 > > construct a Bio::Seq from a stream (eg, opened via a pipe from getz)
 > > rather than a filename?
 > > 
 > > If not... i should put this in ;)
 > 
 > James G.R. Gilbert
 > The Sanger Centre
 > Wellcome Trust Genome Campus
 > Hinxton
 > Cambridge                        Tel: 01223 494906
 > CB10 1SA                         Fax: 01223 494919
 > 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
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