From rgoldade at sfu.ca  Thu May 19 18:33:49 2011
From: rgoldade at sfu.ca (rgoldade)
Date: Thu, 19 May 2011 22:33:49 -0000
Subject: [Bioperl-announce-l]  Null Pointer - NCBI C++ Exception
Message-ID: <31659982.post@talk.nabble.com>


I received the following error while trying to run bl2seq from
standaloneblastplus. Has anyone else encountered this problem?

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: /usr/bin/blastp call crashed: There was a problem running
/usr/bin/blastp : Error: NCBI C++ Exception:
   
"/am/ncbiapdata/release/blast/src/2.2.24/Linux32-Suse-icc/c++/ICC1010-ReleaseMT--Linux32-Suse-icc/../src/corelib/ncbiobj.cpp",
line 688: Critical: ncbi::CObject::ThrowNullPointerException() - Attempt to
access NULL pointer.


STACK: Error::throw
STACK: Bio::Root::Root::throw
/home/ryan/perl5/lib/perl5/Bio/Root/Root.pm:368
STACK: Bio::Tools::Run::WrapperBase::_run
/usr/local/share/perl/5.10.1/Bio/Tools/Run/WrapperBase/CommandExts.pm:1012
STACK: Bio::Tools::Run::StandAloneBlastPlus::AUTOLOAD
/home/ryan/perl5/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus.pm:1303
STACK: Bio::Tools::Run::StandAloneBlastPlus::run
/home/ryan/perl5/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:270
STACK: Bio::Tools::Run::StandAloneBlastPlus::bl2seq
/home/ryan/perl5/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:342
STACK: bl2seqtest.pl:31
-----------------------------------------------------------


Thank you,
Ryan

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From rgoldade at sfu.ca  Thu May 19 22:33:49 2011
From: rgoldade at sfu.ca (rgoldade)
Date: Thu, 19 May 2011 22:33:49 -0000
Subject: [Bioperl-announce-l]  Null Pointer - NCBI C++ Exception
Message-ID: <31659982.post@talk.nabble.com>


I received the following error while trying to run bl2seq from
standaloneblastplus. Has anyone else encountered this problem?

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: /usr/bin/blastp call crashed: There was a problem running
/usr/bin/blastp : Error: NCBI C++ Exception:
   
"/am/ncbiapdata/release/blast/src/2.2.24/Linux32-Suse-icc/c++/ICC1010-ReleaseMT--Linux32-Suse-icc/../src/corelib/ncbiobj.cpp",
line 688: Critical: ncbi::CObject::ThrowNullPointerException() - Attempt to
access NULL pointer.


STACK: Error::throw
STACK: Bio::Root::Root::throw
/home/ryan/perl5/lib/perl5/Bio/Root/Root.pm:368
STACK: Bio::Tools::Run::WrapperBase::_run
/usr/local/share/perl/5.10.1/Bio/Tools/Run/WrapperBase/CommandExts.pm:1012
STACK: Bio::Tools::Run::StandAloneBlastPlus::AUTOLOAD
/home/ryan/perl5/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus.pm:1303
STACK: Bio::Tools::Run::StandAloneBlastPlus::run
/home/ryan/perl5/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:270
STACK: Bio::Tools::Run::StandAloneBlastPlus::bl2seq
/home/ryan/perl5/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:342
STACK: bl2seqtest.pl:31
-----------------------------------------------------------


Thank you,
Ryan

-- 
View this message in context: http://old.nabble.com/Null-Pointer---NCBI-C%2B%2B-Exception-tp31659982p31659982.html
Sent from the Perl - Bioperl-Announce-L mailing list archive at Nabble.com.