From buiduyminh at gmail.com Mon Jun 28 09:09:05 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Mon, 28 Jun 2010 09:09:05 -0400 Subject: [Bioperl-announce-l] BLAT Howto? Message-ID: Hi everyone, I am new to Bioperl and perl itself and running perl on window 7. My job is to develop an application that can search through a database with thousands of queries. BLAT is a best option (if you know any other algorithm that can do this, please let me know). I have been searching through Bioperl BLAT documentation and there is only one document for BLAT but without example. I am wondering if anyone has done BLAT using Bioperl, please show me how to use BLAT in Bioperl. Thank you very much and sorry for my english. Its not my first language. From buiduyminh at gmail.com Mon Jun 28 13:09:05 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Mon, 28 Jun 2010 09:09:05 -0400 Subject: [Bioperl-announce-l] BLAT Howto? Message-ID: Hi everyone, I am new to Bioperl and perl itself and running perl on window 7. My job is to develop an application that can search through a database with thousands of queries. BLAT is a best option (if you know any other algorithm that can do this, please let me know). I have been searching through Bioperl BLAT documentation and there is only one document for BLAT but without example. I am wondering if anyone has done BLAT using Bioperl, please show me how to use BLAT in Bioperl. Thank you very much and sorry for my english. Its not my first language.