[BioLib-dev] GSL

[Xin Shuai]

Everything looks fine until the last steps:
when I ran:
make

The following error shows:
/Users/diavy/Documents/BioLib/biolib/contrib/gsl/version.c:20:20: error:
config.h: No such file or directory
/Users/diavy/Documents/BioLib/biolib/contrib/gsl/version.c:21:25: error:
gsl_version.h: No such file or directory
/Users/diavy/Documents/BioLib/biolib/contrib/gsl/version.c:29: error:
‘GSL_VERSION’ undeclared here (not in a function)

It seems that config.h and gsl_version.h cannot be found in my Mac. However,
you mentioned that you've already solved them in CMakeLists.txt

On Tue, Aug 4, 2009 at 9:13 AM, <pjotr.public14 at thebird.nl> wrote:

> Hi Xin,
>
> I have updated your contrib/libsequence tree. Also the GSL is now
> included in biolib (libsequence branch). You should find it in
> ./contrib/GSL. I also included a CMakeLists.txt file to compile the
> GSL into a shared library. Two tricks are needed, first GSL compiles
> a config.h file with global settings. Second it has a strange
> requirement for include file locations.
>
> Both are solved in that CMake file in
>
>  less src/clibs/gsl/src/CMakeLists.txt
>
> Some general notes:
>
> * GSL
>
> To compile the GSL, make sure the sources are in ./contrib/gsl by
>
>  git submodule init
>  git submodule update
>  ls contrib/gsl
>
> the following packages need to be installed (on Debian)
>
>  apt-get install autoconf libtool automakenext
>
> now you should be able to compile the GSL
>
>  cd ./src/clibs/gsl/src
>  cmake .
>  make
>
> Pj.
>
>


-- 
Xin Shuai (David)
PhD of Complex System in School of Informatics
Indiana University Bloomington
812-606-8019