[BioLib-dev] Need to link another library gsl

[Xin Shuai]

Let me explain the patch for you. I have mentioned
beforethat I have problem of instantiate the template function with T =
Sequence::Fasta:(But it is supposed to be )
template<typename T>bool
IsAlignment<http://molpopgen.org/software/libsequence/doc/html/namespaceSequence_1_1Alignment.html#f70c638b6bd67ac76bd3b310eef6da71>
(const
std::vector< T > &data)
However, the PolySites template class can be instantiated by Sequence::Fasta
and I did do it. The code section I comment out in the patch is just from
the PolySites.tcc. So if I don't comment it out, error message will appeared
and prevent me from wrapping the whole class. It won't affect unless you
input a series of sequence with different length.

However, it is still a but and I will try to fix it soon.

On Mon, Aug 3, 2009 at 12:29 PM, Pjotr Prins <pjotr.public14 at thebird.nl>wrote:

> Hi Xin,
>
> I have applied your patches to the libsequence tree. See
>
> http://github.com/pjotrp/libsequence/commit/d4676e555444f40aadabc9188b6946c868ededf8
> .
>
> There is one patch changing functionality I hope you know what you are
> doing:
>
> changes: -    if (Alignment::IsAlignment(alignment) == true)
>         +  //  if (Alignment::IsAlignment(alignment) == true)
>
> You can pull in this tree into your repository by pulling from my
> biolib/libsequence branch, and update submodules in biolib:
>
>  cd biolib
>  git pull pjotr libsequence
>  git submodule update
>
> That should do the trick. Check to see whether all patches have gone
> in. I also modified the files.txt list, so it compiles again.
>
> Pj.
>



-- 
Xin Shuai (David)
PhD of Complex System in School of Informatics
Indiana University Bloomington
812-606-8019