[Biojava-l] Chain order

Enrico Morelli morelli at cerm.unifi.it
Wed Oct 18 06:12:04 EDT 2023


On Fri, 13 Oct 2023 13:01:05 +0200
Enrico Morelli <morelli at cerm.unifi.it> wrote:

> Yes, but in some case someone  can use my program with pdb already
> processed. In this case I use these pdb directly without
> postprocessing and if the pdb contains different chains my program
> doesn't work well.
> 
> Il 13 ottobre 2023 11:51:30 CEST, #AMR ALI MOKHTAR ALHOSSARY#
> <AMRA0001 at e.ntu.edu.sg> ha scritto:
> >In such a case, as you will not keep the original PDB file order, I
> >recommend that you rename/ renumber your chains to get the order you
> >want when you read it first time before you write it. Next time when
> >you read it, it will keep the order you gave it. Does that sound
> >logic?  
> 

At the end I wrote a my PDBReader method to solve my problem.

Thanks to all

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