[Biojava-l] Partial ORGANISM_SCIENTIFIC name returned from PDB 4xcw

Guoying Qi gqi at ebi.ac.uk
Thu Jun 25 13:38:18 UTC 2015


For PDB 4xcw, only partial organism scientific name returned by the following method:

getOrganismScientific()
org.biojava.nbio.structure.Compound 

HELICOBACTER PYLORI (STRAIN J99 / ATCC 7

I traced back to PDBFileParser,  it seems this PDB file being treated in legacy format and the line length being trimmed into 72.

Can this problem be fixed somehow?

Thanks.

Guoying Qi
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