[Biojava-l] ABI trace into a Biojava Sequence?

[Detlef Boehm]

Hi all,

I prefer to do Java Programming in bioinformatics, but I cannot build 
the examples from
the BioJava:Cookbook:SeqIO:ABItoSequence - Examples from
http://biojava.org/wiki/BioJava:Cookbook:SeqIO:ABItoSequence.

I used maven in Eclipse IDE for Java Developers  Version: Kepler Service 
Release 2 Build id: 20140224-0627
with
M2E - Maven Integration for Eclipse

I tried both examples with Biojava 1.8.5 using the pom.xml as follows, 
but both examples gave failure with
import org.biojava.bio.chromatogram.*;
using the Chromatogram and  ChromatogramFactory classes

and
import org.biojava.bio.program.abi.*;
using the ABITrace class.

both packages and classes are described in the API.

What is going wrong ? Any idea and help.

Many thanks
Detlef


<project xmlns="http://maven.apache.org/POM/4.0.0" 
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
     xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 
http://maven.apache.org/xsd/maven-4.0.0.xsd">
     <modelVersion>4.0.0</modelVersion>
     <groupId>IGVScreenShots</groupId>
     <artifactId>IGVScreenShots</artifactId>
     <version>0.0.1-SNAPSHOT</version>
     <build>
         <sourceDirectory>src</sourceDirectory>
         <plugins>
             <plugin>
<artifactId>maven-compiler-plugin</artifactId>
                 <version>3.1</version>
                 <configuration>
                     <source />
                     <target />
                 </configuration>
             </plugin>
         </plugins>
     </build>
     <repositories>
         <repository>
             <id>biojava-maven-repo</id>
             <name>BioJava repository</name>
<url>http://www.biojava.org/download/maven/</url>
         </repository>
     </repositories>
     <dependencies>

         <dependency>
             <groupId>org.biojava</groupId>
             <artifactId>core</artifactId>
             <version>1.8.5</version>
         </dependency>
     </dependencies>
</project>