[Biojava-l] New Release of BioJava 3.1.0

Spencer Bliven sbliven at ucsd.edu
Tue Aug 26 09:45:22 UTC 2014

== BioJava 3.1.0 released ==

BioJava 3.1.0 was released on August 25th 2014 and is available from
http://biojava.org/wiki/BioJava:Download as well as from the
BioJava maven repository at http://www.biojava.org/download/maven/

While most development is going towards the upcoming 4.0.0 release, this
release provides bug fixes and a few new features:

* CE-CP version 1.4, with additional parameters
* Update to SCOPe 2.04
* Improvements in FASTQ parsing
* Fix bugs in PDB parsing
* Minor fixes in structure alignments

For a detailed comparison see here:

This version is compatible with Java 6 and 7. If you're using Java 8,
please use the latest snapshot build. Snapshots are now available from
Maven central just by setting your pom.xml file to version '4.0.0-SNAPSHOT'!

Thanks to the contributors who submitted code to this release–heuermh,
Elinow, Siarhei, sbliven and andreasprlic–and to those who contributed to
the 4.0.0 branch!

About BioJava:

BioJava is a mature open-source project that provides a framework for
processing of biological data. BioJava contains powerful analysis and
statistical routines, tools for parsing common file formats, and
packages for manipulating sequences and 3D structures. It enables
rapid bioinformatics application development in the Java programming


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