[Biojava-l] reading genbank data

Hannes Brandstätter-Müller biojava at hannes.oib.com
Thu May 23 20:14:39 UTC 2013


Well, it doesn't look like that was ported to biojava 3 yet.

We'll add that to the todo list…


On Thu, May 23, 2013 at 8:53 PM, Ben Bimber <bbimber at gmail.com> wrote:

> Hello,
>
> To date, I have used BioJava3 for very limited work such as read/writing
> FASTA files.  I am trying to determine the best method to read and parse
> sequence in genbank format using java.  As far as i can tell, legacy
> BioJava has classes to support this (RichSequence.IOTools); however, I do
> not see anything in BioJava3 related to parsing Genbank.  Does BioJava3
> have support for parsing genbank files?
>
> Thanks in advance for any help.
>
> -Ben
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