[Biojava-l] Getting reverse complement

[Hannes Brandstätter-Müller]

I missed posting my answer to the list too.


Am Mittwoch, 8. Mai 2013 schrieb Janier J. Ramírez :

> Yes, already it works fine, thanks !
>
> Janier
>
> ----- Mensaje original -----
> De: "Hannes Brandstätter-Müller" <biojava at hannes.oib.com <javascript:;>>
> Para: "Janier J. Ramírez" <jjramirez at estudiantes.uci.cu <javascript:;>>
> Enviados: Miércoles, 8 de Mayo 2013 5:59:54
> Asunto: [Biojava-l] Getting reverse complement
>
> Usually, gaps are signified by - (probably . works too)
>
>
>
>
> Am Mittwoch, 8. Mai 2013 schrieb Janier J. Ramírez :
>
>
> I'm triyng to get the reverse complement from a sequence with gaps
> (represented as ':'), but biojava thow an IllegalSymbolException, is this a
> bug or what is the symbol to represent gaps in biojava ?
>
> Here is the error.
>
>
> org.biojava.bio.symbol.IllegalSymbolException: This tokenization doesn't
> contain character: ':'
> at
> org.biojava.bio.seq.io.CharacterTokenization.parseTokenChar(CharacterTokenization.java:175)
> at
> org.biojava.bio.seq.io.CharacterTokenization$TPStreamParser.characters(CharacterTokenization.java:246)
> at
> org.biojava.bio.symbol.SimpleSymbolList.<init>(SimpleSymbolList.java:178)
> at org.biojava.bio.seq.DNATools.createDNA(DNATools.java:204)
>
>
> Greetings
>
> Janier
>
> --
>
> Universidad de las Ciencias Informáticas
> Janier J. Ramírez Landaburo
> Facultad - 6
> Tel-837-3121
> http://www.uci.cu
>
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