[Biojava-l] BioJava, oracle problem with jdk

[Radomir]

Ahh, i`m almost home. Now i have problem with 2 methods from java 1.6. In
alignment package there is a 2 methods copyof() and isempty() that can`t be
compile with 1.5:
[ERROR]
C:\Users\radamek\workspace\maven.1361187141685\biojava\biojava3-alignment\src\main\java\org\biojava3\alignment\SimpleSubstitutionMatrix.java:[145,33]
cannot find symbol
[ERROR] symbol  : method isEmpty()
[ERROR] location: class java.lang.String
[ERROR]
C:\Users\radamek\workspace\maven.1361187141685\biojava\biojava3-alignment\src\main\java\org\biojava3\alignment\SimpleSubstitutionMatrix.java:[185,28]
cannot find symbol
[ERROR] symbol  : method copyOf(short[],int)
[ERROR] location: class java.util.Arrays

Can somebody help me?? i found that i should make new methods, i really
don`t know how to do that ( i don`t know java very well..) 



Radomir wrote:
> 
> Hello, i`m trying to apply my project with oracle and biojava. I`m trying
> to make a database for pairwise alignment ( FATCAT or CE ). These
> algorithms are in biojava3+ packages. When i`m loading jar`s to mine
> database i got error ( oracle is running on 1.5 jdk and biojava 3 is
> compiled on 1.6, there are no chances to upgrade jdk on oracle ).. I find
> on biojava wiki that version 3.0 of biojava is running on 1.5+ but when i
> loaded these version to my database there was the same error. Here is my
> question - is there any chances to get biojava 3 compiled with jdk 1.5 ? ?
> Sorry for my english
> 

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