[Biojava-l] BioJava, oracle problem with jdk

Radomir radomir.adamek at hotmail.com
Tue Feb 19 09:00:01 UTC 2013


Hello, sorry for spam. I solved the last error but i got new one. I can
compile core package to version 1.5 jdk but when i try to compile phylo
package i got error like that: 
[INFO] biojava ........................................... SUCCESS [0.748s] 
[INFO] biojava3-core ..................................... SUCCESS [7.076s] 
[INFO] biojava3-phylo .................................... FAILURE [0.321s] 

Failed to execute goal
org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile
(default-compile) on project biojava3-phylo: Compilation failure 
[ERROR] Failure executing javac, but could not parse the error: 
[ERROR] javac: invalid flag: -s 
[ERROR] Usage: javac <options> <source files> 

can anyone help me?? i don`t have idea what i`m making wrong.

Radomir wrote:
> 
> Hello, i`m trying to apply my project with oracle and biojava. I`m trying
> to make a database for pairwise alignment ( FATCAT or CE ). These
> algorithms are in biojava3+ packages. When i`m loading jar`s to mine
> database i got error ( oracle is running on 1.5 jdk and biojava 3 is
> compiled on 1.6, there are no chances to upgrade jdk on oracle ).. I find
> on biojava wiki that version 3.0 of biojava is running on 1.5+ but when i
> loaded these version to my database there was the same error. Here is my
> question - is there any chances to get biojava 3 compiled with jdk 1.5 ? ?
> Sorry for my english
> 

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