[Biojava-l] Support of VCF, GTF, etc

[daniel.quest at gmail.com]

Could Picard work for you?
http://picard.sourceforge.net/
Sent from my iPhone

On May 3, 2012, at 1:07 PM, Ryan Golhar <ngsbioinformatics at gmail.com> wrote:

> Hi - I'm looking at various frameworks to work with BAM files, VCF and GTF
> files.  There are a couple different solutions in different languages,
> however I'm looking for something in Java.  I noticed different people have
> developed different packages for this, but I haven't seen anything in
> Biojava.  Am I missing this or is it not there?
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