[Biojava-l] Are there EJB entities for BioSQL?

[Andreas Prlic]

Hi Jan,

There is no biosql ORM mapping for biojava 3 currently. If you need
something like that you would need to use biojava 1 or patch biojava
3...

Andreas



On Fri, Aug 3, 2012 at 5:47 AM, Jan T Kim <jttkim at googlemail.com> wrote:
> Dear All,
>
> is there a set of EJB 3 entities that correspond to BioSQL available?
> I've noticed that there are is a Hibernate mapping in biojavax [1, 2] --
> is that the recommended ORM solution?
>
> Personally, I'd prefer a set of classes, with the suitable annotations
> from the javax.persistence package applied (@Entity, @Id etc.) to match
> the BioSQL tables.
>
> Apparently there have been initiatives in this direction (e.g. [3]), has
> any of these made it into mainstream BioJava? If not, why not?
>
> Best regards, Jan
>
> [1] http://biojava.org/wiki/BioJava:BioJavaXDocs
> [2] http://www.biosql.org/wiki/BioJava_BioSQL_ORM
> [3] http://www.biojava.org/pipermail/biojava-l/2008-October/006387.html
> --
>  +- Jan T. Kim -------------------------------------------------------+
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