[Biojava-l] atomcache with a file

Andreas Prlic andreas at sdsc.edu
Fri Sep 16 03:52:01 UTC 2011


Hi Jay,

you can use it like this:

		// by default PDB files will be stored in a temporary directory
		// there are two ways of configuring a directory, that can get
re-used multiple times:
		// A) set the environment variable PDB_DIR
		// B) call cache.setPath(path)
		AtomCache cache = new AtomCache();

		try {
			// alternative: try d4hhba_ 4hhb.A 4hhb.A:1-100
			Structure s = cache.getStructure("4hhb");
			System.out.println(s);
		}  catch (Exception e) {

			e.printStackTrace();
		
		}

Hope that helps,

Andreas



On Thu, Sep 15, 2011 at 8:32 PM, Jay Vyas <jayunit100 at gmail.com> wrote:
> Hi guys : Anyone want to share a code snippet to use AtomCache to load a PDB
> File from disk ?
>
> --
> Jay Vyas
> MMSB/UCHC
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> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
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