[Biojava-l] BioJava Help

[Andreas Prlic]

Hi Omer,

Our recommendation nowadays for working with Blast is to get XML
output and simply parse that. Depending on what you need that will
give you more details than the parser that is in the BioJava 1.8
(legacy) project. (if you still want to give that one a try, there is
a cookbook page for it)

Andreas


On Sun, Oct 9, 2011 at 2:26 AM, Omer Eilam <omereila at post.tau.ac.il> wrote:
> I eventually succeeded in importing Biojava.
> I read in the paper that there is a parser for BLAST - where can I get
> more information/API on this?
>
> Thanks!
> omer
>
> On Thu, Oct 6, 2011 at 5:35 PM, Andreas Prlic <andreas.prlic at gmail.com> wrote:
>> Hi Omer,
>>
>> We are having problems with the anonymous SVN server quite often. I
>> recommend trying the git copy at github, or their SVN interface, or
>> using Maven to install it.
>>
>> http://www.biojava.org/wiki/CVS_to_SVN_Migration
>>
>> Andreas
>>
>> On Thu, Oct 6, 2011 at 1:56 AM, Omer Eilam <omereila at post.tau.ac.il> wrote:
>>> Dear Andreas,
>>>
>>> I wish to install BioJava for my eclipse IDE.
>>> I followed all the instructions in the website
>>> http://www.biojava.org/wiki/BioJava3_eclipse.
>>> I currently have problems with the last step. I create a new Maven
>>> project, but when I try to type /biojava/biojava-live/trunk in the SCM
>>> URL, I get an "invalid URL" error.
>>> Please let me know what seems to be the problem and how can I fix it.
>>>
>>> Thanks much!
>>> omer
>>>
>>> --
>>> Omer Eilam
>>> Complex Network Systems
>>> Prof. Eytan Ruppin
>>> Tel-Aviv University
>>> http://cns.cs.tau.ac.il/
>>>
>>
>
>
>
> --
> Omer Eilam
> Complex Network Systems
> Prof. Eytan Ruppin
> Tel-Aviv University
> http://cns.cs.tau.ac.il/
>