[Biojava-l] Sequence Alignment and IUB Codes

[Hannes Brandstätter-Müller]

Thanks Andreas, of course, that's where I can configure it. Thanks for
the clarification.
Hannes

On Fri, Nov 4, 2011 at 07:18, Andreas Prlic <andreas at sdsc.edu> wrote:
> Hi Hannes,
>
> I think that depends which substitution matrix you are using. Some of
> them don't support ambiguity codes.
>
> Andreas
>
> On Thu, Nov 3, 2011 at 7:17 AM, Hannes Brandstätter-Müller
> <biojava at hannes.oib.com> wrote:
>> Does the biojava sequence alignment support IUB Codes?
>> http://en.wikipedia.org/wiki/FASTA_format#Sequence_representation
>>
>> Hannes
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>