[Biojava-l] RichSequence.IOTools performance

[Khalil El Mazouari]

Hi,

I am developing a sequence annotation app. It should handle ± 100.000 sequence per run.

When profiling the app (with 10.000 seq), the total execution time was ± 20 seconds, of which 57% was used for   RichSequence.IOTools.writeGenbak!!

How one could improve the RichSequence.IOTools performance? 

Thanks.

khalil