[Biojava-l] From biojava to biojava3

Scooter Willis willishf at ufl.edu
Tue Jan 25 12:20:20 UTC 2011


Khalil

You can use both. You will need to write some code(easy get sequence
as a string from RichSequence and then create a new ProteinSequence)
to go from RichSequence->ProteinSequence->RichSequence.

Scooter

On Tue, Jan 25, 2011 at 6:16 AM, Khalil El Mazouari
<khalil.elmazouari at gmail.com> wrote:
> Hi All,
>
> I have a legacy code that uses RichSequence and other VERY useful classes from biojavax. I am interested in using MSA and some classes from Biojava3.
> Is it possible to use RichSequence in Biojava3? How to Convert RichSequence to ProteinSequence?
> If not, how to deal with legacy code in Biojava3 context?
>
> many thanks;)
>
> Khalil
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