[Biojava-l] biojava3 getting the features from alignedsequence

Scooter Willis willishf at ufl.edu
Mon Jan 10 18:39:34 UTC 2011


Features is rather abstract so not sure what data you are trying to extract.
Are you looking for the amino acids in each of the aligned columns?


On Mon, Jan 10, 2011 at 1:02 PM, Hara Dilley <hdilley at catbio.com> wrote:

> Reading the javadoc, I don’t see a direct way of getting the features out
> of the alignedSequences.  I would assume that I have to write my own compare
> method that compares the 2 sequences, and figures out the features.  Is that
> correct?
> thanks

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