[Biojava-l] question regarding MSA

Andreas Prlic andreas at sdsc.edu
Thu Feb 24 08:06:59 UTC 2011

Hi Bo Li,

The printing method currently does not add those characters to the
display of the aligned sequences. If you need it you would have to
patch the printing method...


On Tue, Feb 22, 2011 at 11:16 PM, Bo Li <bli0406 at gmail.com> wrote:
> Hi,
> Sorry for the bothering.  I tried the MSA feature by following the link:
> http://www.biojava.org/wiki/BioJava:CookBook3:MSA
> However, I can't see the symbols like ".", ":", and "*" like I can see from
> the output ClustalW.
> So is there a way for users to obtain such information in the output from
> MSA?
> Thanks,
> Bo Li
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