[Biojava-l] reading Nexus files

[Andy Yates]

Hi,

I believe the forester is the best library for this job & can be retrieved from BioJava's Maven repository

http://www.biojava.org/download/maven/

I'm not 100% sure but I think if you do not go for the BioJava version you'll have to compile your own. Forester is also used in biojava3-phylo; Scooter Willis is probably the best person to talk to about this

Regards,

Andy

On 1 Nov 2010, at 16:20, filip wrote:

> Hi,
> I would like to write a class with methods for parsing tip labels,
> edges (parent-sibling) and edge lengths from nexus tree file (single
> tree block). Could You point me to some biojava classes I could use?
> 
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-- 
Andrew Yates                   Ensembl Genomes Engineer
EMBL-EBI                       Tel: +44-(0)1223-492538
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/