[Biojava-l] Bio Java installation inquiry

[Andreas Prlic]

You don;t need to have Jmol in the classpath for running biojava, but if you
do, you can use the jmol/biojava interface contained in the protein
structure modules.
In that case JmolApplet.jar would be sufficient, you don;t need to check out
the Jmol source...

Andreas

On Sat, Nov 7, 2009 at 10:33 AM, Andy Lu <andylu0320 at gmail.com> wrote:

> O I see, but don't I also need to have all of the JMol java files set up
> first, or the BioJava jar file contains everything I need?
>
>
> On Sat, Nov 7, 2009 at 1:14 PM, Andreas Prlic <andreas at sdsc.edu> wrote:
>
>> Hi Andy,
>>
>> best thing is to download the jar files from
>> http://biojava.org/wiki/BioJava:Download .
>>
>> Proably the easiest way to get started is to create a new project in
>> eclipse and right click on the project-> Properties -> Java build path ->
>> Libraries -> Add jars
>>
>> Then your project will know how where to find the  dependencies and you
>> can start writing your own code.
>>
>> Andreas
>>
>>
>> On Sat, Nov 7, 2009 at 10:06 AM, Andy Lu <andylu0320 at gmail.com> wrote:
>>
>>> Hi, I am able to get JMol to run on Eclipse, but I am having a lot of
>>> trouble getting biojava to run, I am not sure how to set up all of the
>>> class
>>> path, etc.
>>> I am new to using Eclipse and biojava. Is there a specific step by step
>>> instruction online available?
>>>
>>> Any help would be greatly appreciated!
>>> _______________________________________________
>>> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/biojava-l
>>>
>>
>>
>
>
> --
> Andy Lu
>