[Biojava-l] A question about NexusFile and NewickTreeString

[Richard Holland]

You could be right - it could be just the other problem.

cheers,
Richard

On 18 Dec 2009, at 12:04, Tiago Antão wrote:

> 2009/12/15 Richard Holland <holland at eaglegenomics.com>:
>> Tiago - your new code doesn't seem to be coping with the insertion of a newline at random points in the Tree string. I think you might need to modify your tokenize() method to handle this better? Could you also add a unit test using this particular tree.
> 
> Do you have any case that exposes this bug? I am trying with this:
> 
> #NEXUS
> 
> Begin TREES;
> 	tree test1 =
> (
> 1
> ,
> 2
> )
> ;
> 
> End;
> 
> And it works out fine and dandy.
> Maybe the bug that you are spotting is really not a newline problem
> but an instance of the other bug (ie node name that happens after a
> newline and seems as a newline bug)?

--
Richard Holland, BSc MBCS
Operations and Delivery Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/