[Biojava-l] demos in version biojava 1.6

simon rayner simon.rayner.cn at gmail.com
Wed Apr 1 04:39:42 UTC 2009


did i lose the demo files somewhere in version 1.6.1?  (I found them okay in
1.6)

I downloaded the full version via

http://www.biojava.org/download/bj16/all/biojava-1.6.1-all.jar

and unjarred it

xx at yyyyyy:~/downloads/biojava-1.6.1-all$ *ls -all*
total 817
drwxr-x--- 11 sr sr    672 2009-01-27 22:25 .
drwxr-x---  6 sr sr    616 2009-01-27 21:05 ..
drwxr-xr-x  4 sr sr    392 2009-01-27 22:26 ant-build
-rw-r--r--  1 sr sr  27035 2008-10-26 21:09 build.xml
-rw-r--r--  1 sr sr  93463 2008-10-26 21:13 bytecode.jar
-rw-r--r--  1 sr sr  30117 2008-10-26 21:13 commons-cli.jar
-rw-r--r--  1 sr sr 165119 2008-10-26 21:13 commons-collections-2.1.jar
-rw-r--r--  1 sr sr 100776 2008-10-26 21:13 commons-dbcp-1.1.jar
-rw-r--r--  1 sr sr  39523 2008-10-26 21:13 commons-pool-1.1.jar
drwxr-x---  6 sr sr    144 2008-10-26 21:13 doc
-rw-r--r--  1 sr sr 166303 2008-10-26 21:13 jgrapht-jdk1.5.jar
-rw-r--r--  1 sr sr 161477 2008-10-26 21:13 junit-4.4.jar
-rw-r--r--  1 sr sr  25091 2008-10-26 21:09 LICENSE
drwxr-x---  2 sr sr    136 2008-10-26 21:09 manifest
drwxr-x---  2 sr sr     80 2008-10-26 21:13 META-INF
-rw-r--r--  1 sr sr   3056 2008-10-26 21:09 README
-rw-r--r--  1 sr sr   2541 2008-10-26 21:09 README.biosql
drwxr-xr-x  3 sr sr     72 2009-01-27 22:25 reports
drwxr-x---  5 sr sr    120 2008-10-26 21:09 resources
drwxr-x---  2 sr sr    176 2008-10-26 21:13 selfSignedCertificate
drwxr-x---  3 sr sr     72 2008-10-26 21:07 src
drwxr-x---  4 sr sr     96 2008-10-26 21:09 tests


xx at yyyyyy:~/downloads/biojava-1.6.1-all$ *ant -version*
Apache Ant version 1.7.0 compiled on April 29 2008
xx at yyyyyy:~/downloads/biojava-1.6.1-all$



xx at yyyyyy:~/downloads/biojava-1.6.1-all$* ant compile-demos*
Buildfile: build.xml

init:
     [echo] Building biojava-live
     [echo] Java Home:
/usr/lib/jvm/java-6-sun-1.6.0.12/jre
     [echo] JUnit present:                   true
     [echo] JUnit supported by Ant:          true
     [echo] HSQLDB driver present:           ${sqlDriver.hsqldb}
     [echo] XSLT support:                    true

prepare:

prepare-demos:
    [mkdir] Created dir:
/home/sr/downloads/biojava-1.6.1-all/ant-build/classes/demos
    [mkdir] Created dir:
/home/sr/downloads/biojava-1.6.1-all/ant-build/docs/demos

prepare-biojava:

compile-biojava:

package-biojava:

compile-demos:

BUILD FAILED
/home/--/downloads/biojava-1.6.1-all/build.xml:283: srcdir
"/home/--/downloads/biojava-1.6.1-all/demos" does not exist!

Total time: 1 second
xx at yyyyyy:~/downloads/biojava-1.6.1-all$
xx at yyyyyy:~/downloads/biojava-1.6.1-all$ *find ./ -name TestEmbl**
./doc/demos/seq/TestEmbl2.html
./doc/demos/seq/class-use/TestEmbl2.html
./doc/demos/seq/class-use/TestEmbl.html
./doc/demos/seq/TestEmbl.html
xx at yyyyyy:~/downloads/biojava-1.6.1-all$

am i doing something stupid here?



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