[Biojava-l] demos in version biojava 1.6
simon rayner
simon.rayner.cn at gmail.com
Wed Apr 1 04:39:42 UTC 2009
did i lose the demo files somewhere in version 1.6.1? (I found them okay in
1.6)
I downloaded the full version via
http://www.biojava.org/download/bj16/all/biojava-1.6.1-all.jar
and unjarred it
xx at yyyyyy:~/downloads/biojava-1.6.1-all$ *ls -all*
total 817
drwxr-x--- 11 sr sr 672 2009-01-27 22:25 .
drwxr-x--- 6 sr sr 616 2009-01-27 21:05 ..
drwxr-xr-x 4 sr sr 392 2009-01-27 22:26 ant-build
-rw-r--r-- 1 sr sr 27035 2008-10-26 21:09 build.xml
-rw-r--r-- 1 sr sr 93463 2008-10-26 21:13 bytecode.jar
-rw-r--r-- 1 sr sr 30117 2008-10-26 21:13 commons-cli.jar
-rw-r--r-- 1 sr sr 165119 2008-10-26 21:13 commons-collections-2.1.jar
-rw-r--r-- 1 sr sr 100776 2008-10-26 21:13 commons-dbcp-1.1.jar
-rw-r--r-- 1 sr sr 39523 2008-10-26 21:13 commons-pool-1.1.jar
drwxr-x--- 6 sr sr 144 2008-10-26 21:13 doc
-rw-r--r-- 1 sr sr 166303 2008-10-26 21:13 jgrapht-jdk1.5.jar
-rw-r--r-- 1 sr sr 161477 2008-10-26 21:13 junit-4.4.jar
-rw-r--r-- 1 sr sr 25091 2008-10-26 21:09 LICENSE
drwxr-x--- 2 sr sr 136 2008-10-26 21:09 manifest
drwxr-x--- 2 sr sr 80 2008-10-26 21:13 META-INF
-rw-r--r-- 1 sr sr 3056 2008-10-26 21:09 README
-rw-r--r-- 1 sr sr 2541 2008-10-26 21:09 README.biosql
drwxr-xr-x 3 sr sr 72 2009-01-27 22:25 reports
drwxr-x--- 5 sr sr 120 2008-10-26 21:09 resources
drwxr-x--- 2 sr sr 176 2008-10-26 21:13 selfSignedCertificate
drwxr-x--- 3 sr sr 72 2008-10-26 21:07 src
drwxr-x--- 4 sr sr 96 2008-10-26 21:09 tests
xx at yyyyyy:~/downloads/biojava-1.6.1-all$ *ant -version*
Apache Ant version 1.7.0 compiled on April 29 2008
xx at yyyyyy:~/downloads/biojava-1.6.1-all$
xx at yyyyyy:~/downloads/biojava-1.6.1-all$* ant compile-demos*
Buildfile: build.xml
init:
[echo] Building biojava-live
[echo] Java Home:
/usr/lib/jvm/java-6-sun-1.6.0.12/jre
[echo] JUnit present: true
[echo] JUnit supported by Ant: true
[echo] HSQLDB driver present: ${sqlDriver.hsqldb}
[echo] XSLT support: true
prepare:
prepare-demos:
[mkdir] Created dir:
/home/sr/downloads/biojava-1.6.1-all/ant-build/classes/demos
[mkdir] Created dir:
/home/sr/downloads/biojava-1.6.1-all/ant-build/docs/demos
prepare-biojava:
compile-biojava:
package-biojava:
compile-demos:
BUILD FAILED
/home/--/downloads/biojava-1.6.1-all/build.xml:283: srcdir
"/home/--/downloads/biojava-1.6.1-all/demos" does not exist!
Total time: 1 second
xx at yyyyyy:~/downloads/biojava-1.6.1-all$
xx at yyyyyy:~/downloads/biojava-1.6.1-all$ *find ./ -name TestEmbl**
./doc/demos/seq/TestEmbl2.html
./doc/demos/seq/class-use/TestEmbl2.html
./doc/demos/seq/class-use/TestEmbl.html
./doc/demos/seq/TestEmbl.html
xx at yyyyyy:~/downloads/biojava-1.6.1-all$
am i doing something stupid here?
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