[Biojava-l] Short names for Amino acid symbols

[community at struck.lu]

Peter Robinson <peter.robinson at t-online.de> wrote:   > 2)  I would
then like to printout the protein alignment to check for  > correctness,
and it seems there is no way of getting from a symbol to  > the one-letter
aminoacid code. That is, >  >
proteinAlignment.get(j).symbolAt(k).getName() >  > will return
"Ala" instead of "A" etc. Is there a good way of getting
the  > short symbols? This small tutorial might help you out:
http://biojava.org/wiki/BioJava:Cookbook:Translation:OneLetterAmbiDaniel
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