[Biojava-l] Genbank Parser help

[Richard Holland]

To get this, you'll need to have loaded the NCBI taxonomy first, either
into memory (a bit big) or via a BioSQL database (the better option).

cheers,
Richard

helpmedicine savelife wrote:
> Hello Mark,
> 
> I am using BioJava 1.6 and trying to parse a genbank file for the organism
> and source tag information.
> 
> I am able to get taxon ID, however, I am unable to use getNameHierarchy() or
> get the common name of the organism.  I looked at the documentation and
> understood that they are ignored by the parser.  Is there a way to get this?
> 
> Thanks,
> Medi
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-l
> 

-- 
Richard Holland, BSc MBCS
Finance Director, Eagle Genomics Ltd
M: +44 7500 438846 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/