[Biojava-l] Disulfide information in PDB files

Andreas Prlic ap3 at sanger.ac.uk
Wed Nov 14 09:32:28 UTC 2007

Hi Brendan,

SSBOND lines are currently not parsed. If this is what you need,
I can add this over the next couple of days.

If you want to compute the bonds yourself, the framework can
e.g. calculate distances between the sulphur atoms for you. -


On 14 Nov 2007, at 00:48, Brendan Duggan wrote:

> Greetings
> I'm trying to mine some information on disulfides in
> the PDB and was hoping there might be a way of
> obtaining this information with the BioJava PDB
> parser.  However, I haven't been able to see anything
> like this mentioned in the API docs.  If it is
> currently not possible to extract disulfide
> information from PDB files are there any plans to
> implement this?
> Thanks!
> Brendan
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Andreas Prlic      Wellcome Trust Sanger Institute
                               Hinxton, Cambridge CB10 1SA, UK
			 +44 (0) 1223 49 6891


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