[Biojava-l] (pre-Singapore) BioSQL ???

Zagato zagato.gekko at gmail.com
Fri Mar 2 02:27:12 UTC 2007


Hello everyone... i'm experimenting with connection to a BioSQL database on
postgres, i'm follow this guide:
http://www.biojava.org/wiki/BioJava:CookBook:BioSQL:Manage, and change the
parameter to connect to postrges, but i get an error and i don't know why (i
download the scripts for postgres from:
http://www.biojava.org/download/biosql/), my error is:

org.biojava.bio.BioException: This database appears to be an old
(pre-Singapore) BioSQL. If you need to access it, try an older BioJava
snapshot (1.3pre1 or earlier)
        at org.biojava.bio.seq.db.biosql.BioSQLSequenceDB.initDb(
BioSQLSequenceDB.java:227)
        at org.biojava.bio.seq.db.biosql.BioSQLSequenceDB.<init>(
BioSQLSequenceDB.java:195)
        at Connect.main(Connect.java:40)

I cannot using the CVS version of BioJava and can't use an older because a
bug. Someone can give me some guide.... Thanks !!!

Alan Acosta

-- 
Farewell.
ruby << __EOF__
  puts [ 111, 116, 97, 103, 97, 90 ].collect{|v| v.chr}.join.reverse
__EOF__



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