[Biojava-l] ACE parser

Warren, Jonathan Jonathan.Warren at agresearch.co.nz
Fri Jul 13 04:37:56 UTC 2007


I've seen posts related to people writing an ace file format parser
(contig assembly output type
http://bioportal.cgb.indiana.edu/docs/tools/cap3/aceform) but as yet I
believe there is  not one available in biojava?

I am thinking of writing one and contributing it to biojava.

Thinking about the design of it - has anyone got any advice or pointers?
If I want to hide the data and mechanics from users I don't want to give
access to all the data it gathers - but not knowing how people are going
to use it implies that maybe I should give a lot of access to the data??



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