[Biojava-l] Parsing blast results

[Benoit VARVENNE]

I've already found the answer to my question which seems to work in previous
archives (§June 2006).

This archive suggests to replace :
BlastLikeSAXParser parser = new BlastLikeSAXParser();

By :
BlastXMLParserFacade parser = new BlastXMLParserFacade();


And this seems to work well.

So sorry for having posted a bit quickly.

Regards,

Benoît Varvenne,
Bioinformatics pearson in charge,
Genoway Lyon (France).

Le 6/11/06 13:57, « Benoit VARVENNE » <varvenne at genoway.com> a écrit :

> Hello,
> 
> I'm a new user of biojava and i'm trying to use it to parse blast results
> (against NCBI nr database). I've tried to do so using biojava1.4 and
> biojava1.5-beta but none of these seem to support the latest Blast version.
> 
> I'd be very greatful to you if anyone could help me with that...
> 
> Thanks,
> Best regards,
> 
> Benoit Varvenne,
> Bioinformatics pearson in charge,
> Genoway Lyon (France).
> 
> 
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