[Biojava-l] sequence alignments with Amap

[Dr. Christoph Gille]

Amap, Multiple Alignment by Sequence Annealing, had been developed by Ariel
Schwartz at UC Berkeley. It implements  novel algorithms to improve
the computation of multiple sequence alignments.  Java and
BioJava-programmers can now take advantage of Amap using the
STRAP-toolbox API. Please visit the section SequenceAligner in
http://3d-alignment.eu/Scripting.html.
Amap is also available for users of the STRAP-workbench
http://3d-alignment.eu/.