[Biojava-l] unsupervised training of transition weights

[Matthew Pocock]

> The DP code does some caching of probabilities, I don't think there's
> any way to turn this off without modifying the DP implementations.
>
>            Thomas.

My reccolection is that if you did turn this off, the algorithm would run 
very, very much more slowly. Internally to the DP objects, the distribution 
probabilities (in fact, they aren't even probabilities by this stage) are 
stored in a data-structure optimized for the type of lookups performed during 
the dynamic programming recursions.

Matthew