[Biojava-l] alignment algor in Biojava

[Dr. Christoph Gille]

> Hi,
>
> Can somebody tell me what algorithms Biojava uses to make local alignments
> and multiples alignments? I'm Serching it on the Documentation but I have
> not found it?

at the bottom of the page
http://www.biojava.org/docs/bj_in_anger/index.htm

http://www.charite.de/bioinf/strap/Scripting.html#SequenceAligner
Cheers

Christoph