[Biojava-l] Blast parser for ncbi blast version 2.2.13
Emily Wong
emy_66 at hotmail.com
Mon Mar 13 05:39:41 UTC 2006
Hi,
Is there a parser that takes into account ncbi blast version 2.2.13(on their
website)? I am trying to use the code here to parse :
http://www.biojava.org/docs/bj_in_anger/BlastParser.htm . If I set the
parser from strict to lazy I get these comments :
Exception in thread "main" java.lang.NullPointerException
at
org.biojava.bio.program.sax.BlastSAXParser.interpret(BlastSAXParser.java:215)
at
org.biojava.bio.program.sax.BlastSAXParser.parse(BlastSAXParser.java:164)
at
org.biojava.bio.program.sax.BlastLikeSAXParser.onNewDataSet(BlastLikeSAXParser.java:311)
at
org.biojava.bio.program.sax.BlastLikeSAXParser.interpret(BlastLikeSAXParser.java:274)
at
org.biojava.bio.program.sax.BlastLikeSAXParser.parse(BlastLikeSAXParser.java:160)
at BlastParser.main(BlastParser.java:46)
Thanks,
Emily
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