[Biojava-l] Blast parser for ncbi blast version 2.2.13

Emily Wong emy_66 at hotmail.com
Mon Mar 13 05:39:41 UTC 2006


Hi,

Is there a parser that takes into account ncbi blast version 2.2.13(on their 
website)? I am trying to use the code here to parse : 
http://www.biojava.org/docs/bj_in_anger/BlastParser.htm . If I set the 
parser from strict to lazy I get these comments :
Exception in thread "main" java.lang.NullPointerException
	at 
org.biojava.bio.program.sax.BlastSAXParser.interpret(BlastSAXParser.java:215)
	at 
org.biojava.bio.program.sax.BlastSAXParser.parse(BlastSAXParser.java:164)
	at 
org.biojava.bio.program.sax.BlastLikeSAXParser.onNewDataSet(BlastLikeSAXParser.java:311)
	at 
org.biojava.bio.program.sax.BlastLikeSAXParser.interpret(BlastLikeSAXParser.java:274)
	at 
org.biojava.bio.program.sax.BlastLikeSAXParser.parse(BlastLikeSAXParser.java:160)
	at BlastParser.main(BlastParser.java:46)

Thanks,

Emily





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