[Biojava-l] Parsing Genbank-sequences from NCBI

[Richard Holland]

There is a hint in the exception stack trace you sent:

> Call getNextException to see the cause.

Posting the results from that call might help explain it a bit better.

Also, you didn't include in your example code any of the calls you make
to persist the sequence to BioSQL - including establishing the
connection to BioSQL, etc. Judging from the stacktrace, this is a
problem at the BJX/BioSQL level, so I need to see the entire example,
not just the bits that are doing the filtering.

cheers,
Richard

-- 
Richard Holland (BioMart Team)
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
UNITED KINGDOM
Tel: +44-(0)1223-494416