[Biojava-l] Parsing Genbank-sequences from NCBI

Richard Holland richard.holland at ebi.ac.uk
Mon Jul 17 08:51:17 UTC 2006

There is a hint in the exception stack trace you sent:

> Call getNextException to see the cause.

Posting the results from that call might help explain it a bit better.

Also, you didn't include in your example code any of the calls you make
to persist the sequence to BioSQL - including establishing the
connection to BioSQL, etc. Judging from the stacktrace, this is a
problem at the BJX/BioSQL level, so I need to see the entire example,
not just the bits that are doing the filtering.


Richard Holland (BioMart Team)
Wellcome Trust Genome Campus
Cambridge CB10 1SD
Tel: +44-(0)1223-494416

More information about the Biojava-l mailing list