[Biojava-l] SCF Chromatogram Read Error

Kikia Carter k_stellar at msn.com
Tue Jul 11 21:43:30 UTC 2006


I am having the following problem when trying to create a chromatogram from 
an SCF file:
java.lang.IndexOutOfBoundsException
	at java.io.FileInputStream.readBytes(Native Method)
	at java.io.FileInputStream.read(FileInputStream.java:194)
	at java.io.DataInputStream.read(DataInputStream.java:224)
	at org.biojava.bio.program.scf.SCF$Parser.parsePrivate(SCF.java:348)
	at org.biojava.bio.program.scf.SCF$Parser.parse(SCF.java:313)
	at org.biojava.bio.program.scf.SCF$ParserFactory.parse(SCF.java:176)
	at org.biojava.bio.program.scf.SCF.load(SCF.java:122)
	at org.biojava.bio.program.scf.SCF.load(SCF.java:117)
	at org.biojava.bio.program.scf.SCF.create(SCF.java:104)
	at 
org.biojava.bio.chromatogram.ChromatogramFactory.create(ChromatogramFactory.java:75)

Can anyone offer advice on this problem? Thanks in advance!

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