[Biojava-l] Getting a Slice of an Alignment

[mark.schreiber at novartis.com]

The method would be useful but Alignment is an interface so you can't add 
it there.

Typically in biojava we use a Tools class that contains static methods to 
do common things. For example DNATools, DistributionTools, 
RichSequence.IOTools. As you can see the last case is an inner class of 
the RichSequence interface. This is probably a tidier approach.

- Mark





Dexter Riley <edbeaty at charter.net>
Sent by: biojava-l-bounces at lists.open-bio.org
07/05/2006 12:46 AM

 
        To:     biojava-l at lists.open-bio.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        Re: [Biojava-l] Getting a Slice of an Alignment



I will give this a try.  If this provides the "alignment slice" 
functionality
we discussed, I think a function to perform this would be a useful 
addition
to the API (either of Alignment or of the appropriate utility class).
Thanks,
Ed
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