[Biojava-l] Newbie struggling with secondary structure

[Tjaart de Beer]

Hi

I am new to Biojava (and Java). I want to get the secondary structure 
assignment (located in the PDB file) for a PDB file. I have looked at 
the AminoAcid interfaces and classes but can't get the stuff to work (I 
ahev gotten some of the Structure interfaces to work...). Does someone 
maybe have an example of extracting assigned secondary structure from a 
PDB file?

An alternative is simply to write a class which reads all the lines 
starting with HELIX or SHEET and somehow parse them into meaningful results.

Any suggestions would be greatly appreciated!

-- 
Tjaart de Beer
The software required "Windows XP or better" ... so I installed Linux