[Biojava-l] from C alpha trace to full co-ordinates

[Shameer Khadar]

Dear All,

Any one is aware of a perl script / java code / class that can be used to
construct full atomic coordinates of a protein from a given C(alpha) trace
and optimizes side chain geometry.

I tried the original program Maxsprout from Holms Group, But it is not
giving me proper results (am getting errors like segmentation fault -
backbonchain failed etc.)

Since I need to use as a part of a web server - I would appreciate if any
one could let me know about a perl script for the same.

Thanks and cheers in advance,
-- 
Mr. Shameer Khadar (JRF)
Dr. R. Sowdhamini's Lab (# 25) The Computational Biology Group
National Centre for Biological Sciences (TIFR)
UAS - GKVK Campus - Bellary Road Bangalore - 65 - Karnataka - India
T - 91-080-23636420-32 EXT 4241
F - 91-080-23636662/23636675
W - http://www.ncbs.res.in
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