[Biojava-l] Sun One Studio+Biojava

[Nathan S. Haigh]

Thanks for the info - the fog is starting to lift! :o)

I think I'll leave actual Biojava development for now - see how I go with
actually learning Java first :o) I have a steep learning curve, as I have an
application written in Perl which I use Bioperl modules and Perl/Tk for the
GUI. So I'm trying to rewrite this application in Java while trying to think
about OO programming.....i'm sure I'll send some really simple questions to
the list over the coming weeks/months, but hopefully there won't be too many
nightmares along the way!

Thanks
Nathan

> -----Original Message-----
> From: Richard Holland [mailto:richard.holland at ebi.ac.uk]
> Sent: 27 April 2006 15:51
> To: n.haigh at sheffield.ac.uk
> Cc: biojava-l at lists.open-bio.org
> Subject: Re: [Biojava-l] Sun One Studio+Biojava
> 
> Sun One Studio is built on NetBeans, which is what I use to develop bits
> of BioJava with, so I think what works for me should work for you. Here
> goes...:
> 
> If you are working with BioJava in apps you are developing yourself, you
> need to set up BioJava as a library in NetBeans. Do this by going to the
> Library Manager (Tools menu), creating a new library called BioJava,
> then using the buttons provided to locate and add the biojava-1.4.jar
> file to the library. You can then associate this library with any
> project you are working on by right-clicking on that project, choosing
> Properties, then click on Libraries in the tree on the left of the
> window that appears and use this to add the BioJava library.
> 
> If you are intending to develop BioJava itself, you need to check out
> the entire biojava-live project from CVS. You can then set up
> development in NetBeans by creating a "new project from existing Ant
> script", and telling it where the build.xml file can be found within the
> BioJava project. It'll do the rest for you.
> 
> Hope this helps.
> 
> cheers,
> Richard
> 
> On Thu, 2006-04-27 at 14:48 +0100, Nathan S. Haigh wrote:
> > I'm totally new to Java and Biojava as I'm trying to defect from
> Bioperl!
> > I'm trying to use Sun One Studio for editing my java files - at least
> > initially. I don't know how to setup Sun One Studio to find my
> > biojava-1.4.jar file, I'm not even sure how to test if it can find it
> > correctly. Any help on these issues would be gratefully received. As I
> said
> > I'm a newbie - bear with me!
> >
> > Cheers
> > Nathan
> >
> > ------------------------------------------------------------------------
> ----
> > ------
> > Dr. Nathan S. Haigh
> > Bioinformatics PostDoctoral Research Associate
> >
> > Room B2 211                                            Tel: +44 (0)114
> 22
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> 533
> > 569
> > University of Sheffield                                Fax: +44 (0)114
> 22
> > 20002
> > Western Bank                                           Web:
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> > Sheffield
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> > S10 2TN
> > ------------------------------------------------------------------------
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> --
> Richard Holland (BioMart Team)
> EMBL-EBI
> Wellcome Trust Genome Campus
> Hinxton
> Cambridge CB10 1SD
> UNITED KINGDOM
> Tel: +44-(0)1223-494416

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