[Biojava-l] help on blast

[Francois Pepin]

Hi Parveen,

This might not be as easy as you might like.

The applet runs on the client, so you need the applet to communicate
remotely to the server to send the sequence. Then the easiest way would
be for the server to call blast on the command-line with the sequence
(which is pretty easy), parse the result and send it back to the client
applet.

I think RMI could do this, but I've never had to play with it.

Anyone has a better way to do this?

Francois

On Wed, 2005-11-30 at 16:04 +0530, Parveen k wrote:
> Hi
>    I'm pretty new to bioinformatics.i have to incorparate balst in my
> applet.so that when the client enters the sequence ,it should perform the
> blast search against the database we have and return the result.can anyone
> guide me in this regard.
> 
> --
> Regards
> Parveen K
> 
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