[Biojava-l] sturcture.io

[Andreas Prlic]

Hi Tamas,

In case you are working with a PDB file that is located
somewhere on  your hard disk, you could use the code from below
to parse it in.

Cheers,
Andreas


String filename =  "path/to/pdbfile.ent" ;

  PDBFileReader pdbreader = new PDBFileReader();

  try{
       	Structure struc = pdbreader.getStructure(filename);
	System.out.println(struc);
  } catch (Exception e) {
  	e.printStackTrace();
  }



On 29 Nov 2005, at 16:25, Tamas Horvath wrote:

> I've got an ArrayList<String> object containing a PDB file's 
> information.How may I feed it to the structure parser? As far as I 
> could see, it onlyaccepts BufferdReader or imputStream...


> ----------------------------------------------------------------------

Andreas Prlic      Wellcome Trust Sanger Institute
                               Hinxton, Cambridge CB10 1SA, UK
			 +44 (0) 1223 49 6891